NAME

       antsAlignOrigin - part of ANTS registration suite

DESCRIPTION

   COMMAND:
              antsAlignOrigin

              antsAlignOrigin,  applied to an input image, transforms it according to a reference
              image and a transform (or a set of transforms).

   OPTIONS:
       -d, --dimensionality 2/3

              This option forces the image to be treated as a specified-dimensional image. If not
              specified, antsWarp tries to infer the dimensionality from the input image.

       -i, --input inputFileName

              Currently, the only input objects supported are image objects. However, the current
              framework allows for warping of other objects such as meshes and point sets.

       -r, --reference-image imageFileName

              For warping input images, the reference image defines the  spacing,  origin,  size,
              and direction of the output warped image.

       -o, --output warpedOutputFileName

              [transform,alignedImage]

              One can either output the warped image or, if the boolean is set, one can print out
              the displacement field based on thecomposite transform and the reference image.

       -h

              Print the help menu (short version).  <VALUES>: 0

       --help

              Print the help menu.  <VALUES>: 1, 0