Provided by: pyfai_0.15.0+dfsg1-1_all 
NAME
calibration - manual page for calibration from pyFAI version 0.15.0: 30/01/2018
DESCRIPTION
usage: pyFAI-calib2 [options] input_image.edf
Calibrate the diffraction setup geometry based on Debye-Sherrer rings images without a
priori knowledge of your setup. You will need to provide a calibrant or a "d-spacing" file
containing the spacing of Miller plans in Angstrom (in decreasing order). Calibrants
available: CeO2, Al, ZnO, Si_SRM640d, Au, quartz, Si_SRM640e, Ni, Si_SRM640c,
LaB6_SRM660b, CuO, mock, CrOx, Si, Si_SRM640b, alpha_Al2O3, NaCl, PBBA, LaB6_SRM660c,
Si_SRM640, LaB6, cristobaltite, C14H30O, LaB6_SRM660a, TiO2, Si_SRM640a, Cr2O3, AgBh or
search in the American Mineralogist database: http://rruff.geo.arizona.edu/AMS/amcsd.php
positional arguments:
FILE List of files to calibrate
optional arguments:
-h, --help
show this help message and exit
-V, --version
show program's version number and exit
-o FILE, --out FILE
Filename where processed image is saved
-v, --verbose
switch to debug/verbose mode
-c FILE, --calibrant FILE
Calibrant name or file containing d-spacing of the reference sample (MANDATORY,
case sensitive !)
-w WAVELENGTH, --wavelength WAVELENGTH
wavelength of the X-Ray beam in Angstrom. Mandatory
-e ENERGY, --energy ENERGY
energy of the X-Ray beam in keV (hc=12.398419739640717keV.A).
-P POLARIZATION_FACTOR, --polarization POLARIZATION_FACTOR
polarization factor, from -1 (vertical) to +1 (horizontal), default is None (no
correction), synchrotrons are around 0.95
-D DETECTOR_NAME, --detector DETECTOR_NAME
Detector name (instead of pixel size+spline)
-m MASK, --mask MASK
file containing the mask (for image reconstruction)
-i FILE, --poni FILE
file containing the diffraction parameter (poni-file). MANDATORY for
pyFAI-recalib!
-b BACKGROUND, --background BACKGROUND
Automatic background subtraction if no value are provided
-d DARK, --dark DARK
list of comma separated dark images to average and subtract
-f FLAT, --flat FLAT
list of comma separated flat images to average and divide
-s SPLINE, --spline SPLINE
spline file describing the detector distortion
-n NPT, --pt NPT
file with datapoints saved. Default: basename.npt
--filter FILTER
select the filter, either mean(default), max or median
-l DISTANCE, --distance DISTANCE
sample-detector distance in millimeter. Default: 100mm
--dist DIST
sample-detector distance in meter. Default: 0.1m
--poni1 PONI1
poni1 coordinate in meter. Default: center of detector
--poni2 PONI2
poni2 coordinate in meter. Default: center of detector
--rot1 ROT1
rot1 in radians. default: 0
--rot2 ROT2
rot2 in radians. default: 0
--rot3 ROT3
rot3 in radians. default: 0
--fix-wavelength
fix the wavelength parameter. Default: Activated
--free-wavelength
free the wavelength parameter. Default: Deactivated
--fix-dist
fix the distance parameter
--free-dist
free the distance parameter. Default: Activated
--fix-poni1
fix the poni1 parameter
--free-poni1
free the poni1 parameter. Default: Activated
--fix-poni2
fix the poni2 parameter
--free-poni2
free the poni2 parameter. Default: Activated
--fix-rot1
fix the rot1 parameter
--free-rot1
free the rot1 parameter. Default: Activated
--fix-rot2
fix the rot2 parameter
--free-rot2
free the rot2 parameter. Default: Activated
--fix-rot3
fix the rot3 parameter
--free-rot3
free the rot3 parameter. Default: Activated
--tilt Allow initially detector tilt to be refined (rot1, rot2, rot3). Default: Activated
--no-tilt
Deactivated tilt refinement and set all rotation to 0
--saturation SATURATION
consider all pixel>max*(1-saturation) as saturated and reconstruct them, default: 0
(deactivated)
--weighted
weight fit by intensity, by default not.
--npt NPT_1D
Number of point in 1D integrated pattern, Default: 1024
--npt-azim NPT_2D_AZIM
Number of azimuthal sectors in 2D integrated images. Default: 360
--npt-rad NPT_2D_RAD
Number of radial bins in 2D integrated images. Default: 400
--unit UNIT
Valid units for radial range: 2th_deg, 2th_rad, q_nm^-1, q_A^-1, r_mm. Default:
2th_deg
--no-gui
force the program to run without a Graphical interface
--no-interactive
force the program to run and exit without prompting for refinements
-r, --reconstruct
Reconstruct image where data are masked or <0 (for Pilatus detectors or detectors
with modules)
-g GAUSSIAN, --gaussian GAUSSIAN
Size of the gaussian kernel. Size of the gap (in pixels) between two consecutive
rings, by default 100 Increase the value if the arc is not complete; decrease the
value if arcs are mixed together.
--square
Use square kernel shape for neighbor search instead of diamond shape
-p PIXEL, --pixel PIXEL
size of the pixel in micron
The output of this program is a "PONI" file containing the detector description and the 6
refined parameters (distance, center, rotation) and wavelength. An 1D and 2D diffraction
patterns are also produced. (.dat and .azim files)
SEE ALSO
The full documentation for calibration is maintained as a Texinfo manual. If the info and
calibration programs are properly installed at your site, the command
info calibration
should give you access to the complete manual.
calibration from pyFAI version 0.15.0: 30/February 2018 CALIBRATION(1)