NAME

       scatter -  BOLD fMRI motion QC plot

SYNOPSIS

       pymvpa2  plotmotionqc  [--version]  [-h]  [-s  FILE  [FILE  ...]] [--estimate-order LABEL]
       [--rad2deg]       [--outlier-minthresh       OUTLIER_MINTHRESH]       [--outlier-stdthresh
       OUTLIER_STDTHRESH] [--savefig FILENAME]

DESCRIPTION

       scatter not available: No module named _tkinter, please install the python-tk package

       Generate a QC plot for (BOLD fMRI) motion estimates of multiple segments.

       The  generated  figure consists of two subplots: one for translation and one for rotation.
       The L2-norm for each motion type is plotted. Segment boundaries are indicated with  dashed
       vertical lines. The following statistics are visualized

       1. Range across subjects (min, max) with a light gray shaded area

       2. 50% percentile around the mean with a medium gray shaded area

       3. Standard error of the mean (SEM; +/-) with a dark gray shaded area

       4. Median across subjects with a black line

       5. Outlier subjects are represented as individual red lines

       Outliers  are  defined  as  subjects  that  exceed  the  threshold anywhere within a given
       segment. In that case the entire motion time series for that  segment  is  plotted  as  an
       outlier.

       Example

       pymvpa2        plotmotionqc            -s        sub*/func/*run-1_bold_mc.txt           -s
       sub*/func/*run-2_bold_mc.txt     --savefig motion.png

OPTIONS

       --version
              show program's version and license information and exit

       -h, --help, --help-np
              show this help message and exit. --help-np forcefully disables the use of  a  pager
              for displaying the help.

       -s FILE [FILE ...], --segment FILE [FILE ...]
              two  or  more text files with motion estimate time series. This option can be given
              multiple times (with multiple time series each to  generate  a  multi-segment  plot
              (e.g. for multiple run).

       --estimate-order LABEL
              column  order  of  estimates  in the files. `transrot` indicates translation first,
              followed  by  rotation.   `rottrans`  refers  to  the  oposite   order.   [Default:
              'transrot']

       --rad2deg
              If  specified, rotation estimates are assumed to be in radian and will be converted
              to degrees.

       --outlier-minthresh OUTLIER_MINTHRESH
              absolute minimum threshold of outlier detection. Only value larger than  this  this
              threshold will ever be considered as an outlier. [Default: None]

       --outlier-stdthresh OUTLIER_STDTHRESH
              minimum  threshold  in units of standard deviation for outlier detection. [Default:
              None]

       --savefig FILENAME
              file name to store the QC figure under. Without this option the figure is shown  in
              an interactive viewer.

       pymvpa2-plotmotionqc 2.6.4

AUTHOR

       Written by Michael Hanke & Yaroslav Halchenko, and numerous other contributors.

COPYRIGHT

       Copyright © 2006-2016 PyMVPA developers

       Permission  is  hereby  granted,  free  of  charge, to any person obtaining a copy of this
       software and associated documentation files (the "Software"),  to  deal  in  the  Software
       without  restriction, including without limitation the rights to use, copy, modify, merge,
       publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons
       to whom the Software is furnished to do so, subject to the following conditions:

       The  above  copyright notice and this permission notice shall be included in all copies or
       substantial portions of the Software.

       THE SOFTWARE IS PROVIDED "AS IS", WITHOUT  WARRANTY  OF  ANY  KIND,  EXPRESS  OR  IMPLIED,
       INCLUDING  BUT  NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR
       PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE  LIABLE
       FOR  ANY  CLAIM,  DAMAGES  OR  OTHER  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
       OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR  THE  USE  OR  OTHER
       DEALINGS IN THE SOFTWARE.

scatter not available: No module named _tkiJanuaryl2018 install the python-tk package  SCATTER(1)