Provided by: bedops_2.4.26+dfsg-1_amd64 
NAME
unstarch - manual page for unstarch 2.4.26+dfsg
DESCRIPTION
unstarch
citation: http://bioinformatics.oxfordjournals.org/content/28/14/1919.abstract
binary version: 2.4.26 (extracts archive version: 2.2.0 or older) authors: Alex
Reynolds and Shane Neph
USAGE: unstarch [ <chromosome> ] [ --elements |
--elements-max-string-length |
--bases | --bases-uniq | --has-duplicates | --has-nested | --list | --list-json |
--list-chromosomes | --archive-timestamp | --note | --archive-version | --is-starch
| --signature | --verify-signature ] <starch-file>
Modifiers
--------------------------------------------------------------------------
<chromosome> Optional. Either unarchives chromosomespecific
records from the starch archive
file or restricts action of operator to
chromosome (e.g., chr1, chrY, etc.).
Process Flags
--------------------------------------------------------------------------
--elements Show total element count for archive. If
<chromosome> is specified, the result
shows the element count for the chromosome.
--elements-max-string-length
Show the maximum string length over all elements in <chromosome>, if specified. If
<chromosome> is not specified, the maximum string length is shown over all
chromosomes.
--bases,
--bases-uniq
Show total and unique base counts, respectively, for archive. If <chromosome> is
specified, the count is specific to the chromosome, if available.
--has-duplicate-as-string,
--has-duplicate
Show whether there is one or more duplicate elements in the specified chromosome,
either as a numerical (1/0) or string (true/false) value. If no <chromosome> is
specified, the value given indicates if there is one or more duplicate elements
across all chromosome records.
--has-nested-as-string,
--has-nested
Show whether there is one ore more nested elements in the specified chromosome,
either as a numerical (1/0) or string (true/false) value. If no <chromosome> is
specified, the value given indicates if there is one or more nested elements across
all chromosome records.
--list List archive metadata (output is in text format). If chromosome is specified, the
attributes of the given chromosome are shown.
--list-json,
--list-json-no-trailing-newline
List archive metadata (output is in JSON format)
--list-chr,
--list-chromosomes
List all or specified chromosome in starch archive (like "bedextract --listchr").
If <chromosome> is specified but is not in the output list, nothing is returned.
--note Show descriptive note, if available.
--signature
Display the Base64-encoded SHA-1 data integrity signature for specified
<chromosome>, or the signatures of the metadata and all available chromosomes, if
the <chromosome> is unspecified.
--verify-signature
Verify data integrity of specified <chromosome>, or the integrity of all available
chromosomes, if the <chromosome> is unspecified.
--archive-timestamp
Show archive creation timestamp (ISO 8601 format).
--archive-type
Show archive compression type.
--archive-version
Show archive version.
--is-starch
Test if <starch-file> is a valid archive and print 0/1 (false/true) to standard
output. Unstarch will also return a nonzero error code if the input file is not a
valid archive.
--version
Show binary version.
--help Show this usage message.
SEE ALSO
The full documentation for unstarch is maintained as a Texinfo manual. If the info and
unstarch programs are properly installed at your site, the command
info unstarch
should give you access to the complete manual.