Provided by: libbio-perl-perl_1.7.2-2_all bug


       Bio::Factory::SeqAnalysisParserFactoryI - interface describing objects capable
                     of creating SeqAnalysisParserI compliant parsers


           # initialize an object implementing this interface, e.g.
           $factory = Bio::Factory::SeqAnalysisParserFactory->new();
           # obtain a parser object
           $parser = $factory->get_parser(-input=>$inputobj,
                                          -method => $method);
           # $parser is an object implementing Bio::SeqAnalysisParserI
           # annotate sequence with features produced by parser
           while(my $feat = $parser->next_feature()) {


       This is an interface for factory classes capable of instantiating SeqAnalysisParserI
       implementing parsers.

       The concept behind the interface is a generic analysis result parsing in high-throughput
       automated sequence annotation pipelines. See Bio::SeqAnalysisParserI for more
       documentation of this concept.


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AUTHOR - Hilmar Lapp, Jason Stajich

       Email Hilmar Lapp <>, Jason Stajich <>


       The rest of the documentation details each of the object methods. Internal methods are
       usually preceded with a _

        Title   : get_parser
        Usage   : $factory->get_parser(-input=>$inputobj,
                                       [ -params=>[@params] ],
                                       -method => $method)
        Function: Creates and returns a parser object for the given input and method.
                  The type of input which is suitable depends on the implementation,
                  but a good-style implementation should allow both file names and
                  streams (filehandles).

                  A particular implementation may not be able to create a parser for
                  the requested method. In this case it shall return undef.

                  Parameters (-params argument) are passed on to the parser object
                  and therefore are specific to the parser to be created. An
                  implementation of this interface should make this argument optional.
        Example :
        Returns : A Bio::SeqAnalysisParserI implementing object.
        Args    : B<input>  - object/file where analysis results are coming from,
                  B<params> - parameter to use when parsing/running analysis
                  B<method> - method of analysis

perl v5.26.1                                2017-12-1Bio::Factory::SeqAnalysisParserFactoryI(3pm)