Provided by: libbio-graphics-perl_2.40-2_all bug


       Bio::Graphics::FeatureDir -- A directory of feature files and conf files


        my $fd = Bio::Graphics::FeatureDir->new('/path/to/dir');

        my $option   = $fd->setting('EST' => 'bgcolor');
        my @features = $fd->get_features_by_name('M101');


       This class implements most of the methods of Bio::Graphics::FeatureFile, but stores the
       data files and features in a directory indexed by the
       Bio::DB::SeqFeature::Store::berkeleydb adaptor. Therefore it is fast.

       $fd = Bio::Graphics::FeatureDir->new('/path/to/dir');
       $fd = Bio::Graphics::FeatureDir->new(-dir => '/path/to/dir');
           Create a new FeatureDir, based in the indicated directory. In addition to the -dir
           directory argument, it takes any of the options that can be passed to
           Bio::Graphics::FeatureFile except for the -file and -text arguments;

           Internal method. Initializes the underlying feature database.

           Internal method -- initialize the configuration file(s)

       $created = $db->_maybe_create_dir($dir)
           Create $dir and its parents if it doesn't exist. Return true if the directory was
           created. Throws an exception on filesystem errors.

       $dir = $db->dir
           Returns the base directory.

       $conf = $db->conf
           Returns the underlying Bio::Graphics::FeatureFile object

       $db = $db->db
           Returns the underlying Bio::DB::SeqFeature::Store object

           Add the file to the directory. Can add files of type .fa, .gff, .gff3, .conf and .ff.

       $db->add_fh(\*FILEHANDLE [,'name'])
           Add the contents of the indicated filehandle to repository.  Name is optional; if
           provided it will be used as the base for all files created.


       Bio::Graphics::Feature, Bio::Graphics::FeatureFile


       Lincoln Stein <>.

       Copyright (c) 2009 Ontario Institute for Cancer Research

       This package and its accompanying libraries is free software; you can redistribute it
       and/or modify it under the terms of the GPL (either version 1, or at your option, any
       later version) or the Artistic License 2.0.  Refer to LICENSE for the full license text.
       In addition, please see DISCLAIMER.txt for disclaimers of warranty.


       Hey! The above document had some coding errors, which are explained below:

       Around line 160:
           '=item' outside of any '=over'

       Around line 272:
           =cut found outside a pod block.  Skipping to next block.

       Around line 274:
           You forgot a '=back' before '=head1'