Provided by: libbio-perl-perl_1.7.2-2_all bug


       Bio::Search::Result::INFERNALResult - A Result object for INFERNAL results


           # typically one gets Results from a SearchIO stream
           use Bio::SearchIO;
           my $io = Bio::SearchIO->new(-format => 'infernal',
                                       -file   => 't/data/cmsearch_output.txt');
           while( my $result = $io->next_result ) {
               while( my $hit = $result->next_hit ) {
                 print join(" ", $result->query_name, $result->algorithm, $result->num_hits), "\n";


       This object is a specialization of Bio::Search::Result::GenericResult. There is one extra
       method called cm_name.


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AUTHOR - Paul Cantalupo


       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

        Title   : new
        Usage   : my $obj = Bio::Search::Result::INFERNALResult->new();
        Function: Builds a new Bio::Search::Result::INFERNALResult object
        Returns : Bio::Search::Result::INFERNALResult
        Args    : -cm_name    => string, name of covariance model (CM) file.
                  plus Bio::Search::Result::GenericResult parameters

        Title   : cm_name
        Usage   : $obj->cm_name($newvalue)
        Function: Get/Set value of the covariance model file name (cm_name)
        Returns : value of cm_name
        Args    : newvalue (optional)