Provided by: libbio-perl-perl_1.7.2-2_all bug


       Bio::Tools::Tmhmm - parse TMHMM output (TransMembrane HMM)


         use Bio::Tools::Tmhmm;
         my $parser = Bio::Tools::Tmhmm->new(-fh => $filehandle );
         while ( my $tmhmm_feat = $parser->next_result ) {
            # do something, e.g.
            push @tmhmm_feat, $tmhmm_feat;


       TMHMM is software for the prediction of transmembrane helices in proteins.  See
       <> for more details.

       This module parses the "long output" format of TMHMM 2.0 and creates a
       Bio:SeqFeature::Generic object for each "TMHelix" feature found from lines like this:

         my_sequence_id  TMHMM2.0  TMhelix     54    76


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AUTHOR - Torsten Seemann

       Email torsten.seemann AT




       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

        Title   : new
        Usage   : my $obj = Bio::Tools::Tmhmm->new();
        Function: Builds a new Bio::Tools::Tmhmm object
        Returns : Bio::Tools::Tmhmm
        Args    : Either of the following as per L<Bio::Root::IO> interface
                    -fh   => $filehandle
                    -file => $filename

        Title   : next_result
        Usage   : my $feat = $Tmhmm->next_result
        Function: Get the next result set from parser data
        Returns : Bio::SeqFeature::Generic
        Args    : none