NAME

       bbFilter - this is a part of mauveAligner package

DESCRIPTION

       bbFilter   <backbone   file>   <independent   dist>   <output   file>  <beast|gp>  [<seq1>
       <seq2>...<seqN>]
       seq index starts at 0.

EXAMPLES

       Example:

              bbFilter my_alignment.backbone 50 my_feats.bin gp

       the  above  command  extracts  binary  features  from  "my_alignment.backbone"  which  are
       separated  by  a  minimum of 50nt sequence conserved among all taxa in the alignment.  The
       output is written to my_feats.bin in genoplast format

       Example 2:

              bbFilter aln.backbone 100 feats.xml beast 0 1 2 5 6

       the above command extracts binary features from "aln.backbone" which are  separated  by  a
       minimum  of 100nt sequence conserved among genomes 0,1,2,5, and 6 from the alignment.  The
       output is written to feats.xml in beast format