NAME

       beauti2 - matches beast2-mcmc

SYNOPSIS

       beauti2  -template  [template  file]  -nex [nexus data file] -xmldat [beast xml file] -xml
       [beast file] -exitaction [writexml|usetemplate|usexml] -out [output file name] -capture -v
       -version -h -help

DESCRIPTION

       BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is
       entirely orientated towards rooted, time-measured phylogenies  inferred  using  strict  or
       relaxed  molecular  clock models. It can be used as a method of reconstructing phylogenies
       but is also a framework for testing evolutionary  hypotheses  without  conditioning  on  a
       single  tree  topology.  BEAST  uses MCMC to average over tree space, so that each tree is
       weighted proportional to its posterior probability. Included is  a  simple  to  use  user-
       interface  program  for  setting up standard analyses and a suit of programs for analysing
       the results.

       This BEAUTI version matches BEAST2-MCMC.

OPTIONS

       -template [template file] : BEAUti template to be used. Default templates/Standard.xml

       -nex [nexus data file] : nexus file to be read using template, multiple -nex arguments are
              allowed

       -xmldat [beast xml file] : as -nex but with BEAST 1 or 2 xml file instead of nexus file

       -xml [beast file] : BEAST 2 XML file to be loaded

       -exitaction [writexml|usetemplate|usexml] : what to do after processing arguments

       -out [output file name] : file to be written

       -capture : captures stdout and stderr and make them available under Help/Messages menu

       -v, -version : print version

       -h, -help : print this help message

AUTHOR

       This  manpage was written by Andreas Tille for the Debian distribution and can be used for
       any other usage of the program.