Provided by: cmtk_3.3.1-1.2build1_amd64 bug


       volume_injection - Volume injection


       volume_injection [options] refImage xform0 inImage0 [xform1 inImage1 ...]


       Reconstruction  a  high-resolution  volume  from  multiple  co-registered (low-resolution)
       images using forward volume injection


   Global Toolkit Options (these are shared by all CMTK tools)
            Write list of basic command line options to standard output.

            Write complete list of basic and advanced command line options to standard output.

            Write list of command line options to standard output in MediaWiki markup.

            Write man page source in 'nroff' markup to standard output.

            Write toolkit version to standard output.

            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Input Options
       --exclude-first-image, -x
            Exclude first image from reconstruction as a separate registration target image)

       --pass-weight <string>, -W <string>
            Set contribution weight for a pass in the form 'pass:weight'

   Reconstruction Grid Options
       --recon-grid <string>
            Define reconstruction grid as Nx,Ny,Nz:dX,dY,dZ[:Ox,Oy,Oz] (dims:pixel:offset)

       --recon-grid-path <string>, -R <string>
            Give path to grid that defines reconstructed image grid [including offset]  [Default:

       --crop <string>
            Crop reference to pixel region x0,y0,z1:x1,y1,z1

   Volume Injection Options
            Use  isotropic  volume  injection  [default:  scaled  with  pass image pixel size per

       --injection-kernel-sigma <double>, -S <double>
            Gauss contribution [Default: 1]

       --injection-kernel-radius <integer>, -r <integer>
            VolumeInjectionRadius of affected pixel [Default: 0]

   Output Options
       --output <string>, -o <string>
            Output image path [Default: volume_injection.nii ]

       --write-images-as-float, -F
            Write output images as floating point [default: same as input]


       Torsten Rohlfing, with contributions from Michael  P.  Hasak,  Greg  Jefferis,  Calvin  R.
       Maurer, Daniel B. Russakoff, and Yaroslav Halchenko



       Report bugs at


       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on
       Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data  Integration  Component.  From
       April  2009  through September 2011, CMTK development and maintenance was supported by the
       NIBIB under Grant EB008381.