Provided by: cmtk_3.3.1-1.2build1_amd64
volume_injection - Volume injection
volume_injection [options] refImage xform0 inImage0 [xform1 inImage1 ...]
Reconstruction a high-resolution volume from multiple co-registered (low-resolution) images using forward volume injection
Global Toolkit Options (these are shared by all CMTK tools) --help Write list of basic command line options to standard output. --help-all Write complete list of basic and advanced command line options to standard output. --wiki Write list of command line options to standard output in MediaWiki markup. --man Write man page source in 'nroff' markup to standard output. --version Write toolkit version to standard output. --echo Write the current command line to standard output. --verbose-level <integer> Set verbosity level. --verbose, -v Increment verbosity level by 1 (deprecated; supported for backward compatibility). --threads <integer> Set maximum number of parallel threads (for POSIX threads and OpenMP). Input Options --exclude-first-image, -x Exclude first image from reconstruction as a separate registration target image) --pass-weight <string>, -W <string> Set contribution weight for a pass in the form 'pass:weight' Reconstruction Grid Options --recon-grid <string> Define reconstruction grid as Nx,Ny,Nz:dX,dY,dZ[:Ox,Oy,Oz] (dims:pixel:offset) --recon-grid-path <string>, -R <string> Give path to grid that defines reconstructed image grid [including offset] [Default: NONE] --crop <string> Crop reference to pixel region x0,y0,z1:x1,y1,z1 Volume Injection Options --isotropic-injection Use isotropic volume injection [default: scaled with pass image pixel size per dimension] --injection-kernel-sigma <double>, -S <double> Gauss contribution [Default: 1] --injection-kernel-radius <integer>, -r <integer> VolumeInjectionRadius of affected pixel [Default: 0] Output Options --output <string>, -o <string> Output image path [Default: volume_injection.nii ] --write-images-as-float, -F Write output images as floating point [default: same as input]
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
Report bugs at http://nitrc.org/projects/cmtk/
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.