Provided by: ecopcr_0.5.0+dfsg-1_amd64
ecogrep - filtering ecoPCR result based on taxonomic id filter and regular expression pattern
ecogrep [options] filename
ecoPCR is an electronic PCR software developed by LECA and Helix-Project. It helps to estimate Barcode primers quality. This program belongs to the exoPCR package.
-1 : [FIRST] : compare the given pattern with direct strand oligonucleotide -2 : [SECOND] : compare the given pattern with reverse strand oligonucleotide -d : [D]atabase containing taxonomic information -e : [E]rrors : max error allowed in pattern match (option-1, -2 and -p) (0 by default) -p : [P]attern : oligonucleotide pattern -h : [H]elp : print <this> help -i : [I]gnore subtree under given taxonomic id -r : [R]estrict search to subtree under given taxomic id -v : in[V]ert the sense of matching, to select non-matching lines. argument: ecoPCR output file name