Provided by: emboss_6.6.0+dfsg-6build1_amd64 bug


       edialign - Local multiple alignment of sequences


       edialign -sequences seqset -nucmode list -revcomp boolean [-overlapw selection]
                [-linkage list] [-maxfragl integer] -fragmat boolean -fragsim integer
                [-itscore boolean] [-threshold float] -mask boolean -dostars boolean
                -starnum integer -outfile outfile -outseq seqoutall

       edialign -help


       edialign is a command line program from EMBOSS (“the European Molecular Biology Open
       Software Suite”). It is part of the "Alignment:Multiple" command group(s).


   Input section
       -sequences seqset

   Additional section
       -nucmode list
           Nucleic acid sequence alignment mode (simple, translated or mixed) Default value: n

       -revcomp boolean
           Default value: N

       -overlapw selection
           By default overlap weights are used when Nseq =<35 but you can set this to 'yes' or
           'no' Default value: default (when Nseq =< 35)

       -linkage list
           Clustering method to construct sequence tree (UPGMA, minimum linkage or maximum
           linkage) Default value: UPGMA

       -maxfragl integer
           Default value: 40

       -fragmat boolean
           Default value: N

       -fragsim integer
           Default value: 4

       -itscore boolean
           Default value: N

       -threshold float
           Default value: 0.0

   Output section
       -mask boolean
           Default value: N

       -dostars boolean
           Default value: N

       -starnum integer
           Default value: 4

       -outfile outfile

       -outseq seqoutall


       Bugs can be reported to the Debian Bug Tracking system (, or
       directly to the EMBOSS developers


       edialign is fully documented via the tfm(1) system.


       Debian Med Packaging Team <>
           Wrote the script used to autogenerate this manual page.


       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package.
       It can be redistributed under the same terms as EMBOSS itself.