Provided by: fastaq_3.17.0-1_all
fastaq_add_indels - Deletes or inserts bases at given position(s)
usage: fastaq_add_indels [options] <infile> <outfile> Deletes or inserts bases at given position(s) positional arguments: infile Name of input file outfile Name of output file optional arguments: -h, --help show this help message and exit -d Name:start:bases, --delete Name:start:bases Delete the given bases from the given sequence. Format same as samtools view: name:start-end. This option can be used multiple times (once for each region to delete). Overlapping coords will be merged before deleting --delete_range P,start,step Deletes bases starting at position P in each sequence of the input file. Deletes start + (n-1)*step bases from sequence n. -i Name:start:bases, --insert Name:start:bases Insert a random string of bases at the given position. Format is name:position:number_to_add. Bases are added after the position. This option can be used multiple times --insert_range P,start,step Inserts random bases starting after position P in each sequence of the input file. Inserts start + (n-1)*step bases into sequence n.