NAME

       ('mia\-2ddeform',) - Transform a 2D image by means of a vector field.

SYNOPSIS

       mia-2ddeform -i <in-file> -o <out-file> -t <transformation> [options]

DESCRIPTION

       mia-2ddeform  This  program is used to deform a 2D image using a deformation vector field.
       Input image and deformation field must be of the same size. The transformation formula  is
       'x -> x - v(x)'

OPTIONS

              -i --in-file=(input, required); io
                     input image
                      For supported file types see PLUGINS:2dimage/io

              -o --out-file=(output, required); io
                     transformed  image
                      For supported file types see PLUGINS:2dimage/io

              -t --transformation=(input, required); io
                     transformation vector field
                      For supported file types see PLUGINS:2dvf/io

              -p --interpolator=bspline:d=3
                     image interpolator kernel
                      For supported plugins see PLUGINS:1d/splinekernel

   Help & Info
              -V --verbose=warning
                     verbosity  of  output,  print messages of given level and higher priorities.
                     Supported priorities starting at lowest level are:

                        info ‐ Low level messages
                        trace ‐ Function call trace
                        fail ‐ Report test failures
                        warning ‐ Warnings
                        error ‐ Report errors
                        debug ‐ Debug output
                        message ‐ Normal messages
                        fatal ‐ Report only fatal errors

                 --copyright
                     print copyright information

              -h --help
                     print this help

              -? --usage
                     print a short help

                 --version
                     print the version number and exit

   Processing
                 --threads=-1
                     Maxiumum number of threads to use for processing,This number should be lower
                     or  equal  to  the  number  of  logical processor cores in the machine. (-1:
                     automatic estimation).

PLUGINS: 1d/splinekernel

       bspline   B-spline kernel creation , supported parameters are:

                     d = 3; int in [0, 5]
                       Spline degree.

       omoms     OMoms-spline kernel creation, supported parameters are:

                     d = 3; int in [3, 3]
                       Spline degree.

PLUGINS: 2dimage/io

       bmp       BMP 2D-image input/output support. The plug-in supports reading and  writing  of
                 binary  images  and  8-bit  gray scale images. read-only support is provided for
                 4-bit gray scale images. The color table is ignored and  the  pixel  values  are
                 taken as literal gray scale values.

                     ('Recognized file extensions: ', '.BMP, .bmp')

                     Supported element types:
                       binary data, unsigned 8 bit

       datapool  Virtual IO to and from the internal data pool

                     ('Recognized file extensions: ', '.@')

       dicom     2D image io for DICOM

                     ('Recognized file extensions: ', '.DCM, .dcm')

                     Supported element types:
                       signed 16 bit, unsigned 16 bit

       exr       a 2dimage io plugin for OpenEXR images

                     ('Recognized file extensions: ', '.EXR, .exr')

                     Supported element types:
                       unsigned 32 bit, floating point 32 bit

       jpg       a 2dimage io plugin for jpeg gray scale images

                     ('Recognized file extensions: ', '.JPEG, .JPG, .jpeg, .jpg')

                     Supported element types:
                       unsigned 8 bit

       png       a 2dimage io plugin for png images

                     ('Recognized file extensions: ', '.PNG, .png')

                     Supported element types:
                       binary data, unsigned 8 bit, unsigned 16 bit

       raw       RAW 2D-image output support

                     ('Recognized file extensions: ', '.RAW, .raw')

                     Supported element types:
                       binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit,
                       signed 32 bit, unsigned 32 bit, floating point 32 bit, floating  point  64
                       bit

       tif       TIFF 2D-image input/output support

                     ('Recognized file extensions: ', '.TIF, .TIFF, .tif, .tiff')

                     Supported element types:
                       binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32 bit

       vista     a 2dimage io plugin for vista images

                     ('Recognized file extensions: ', '.-, .V, .VISTA, .v, .vista')

                     Supported element types:
                       binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit,
                       signed 32 bit, unsigned 32 bit, floating point 32 bit, floating  point  64
                       bit

PLUGINS: 2dvf/io

       datapool  Virtual IO to and from the internal data pool

                     ('Recognized file extensions: ', '.@')

       exr       a 2dvf io plugin for OpenEXR vfs

                     ('Recognized file extensions: ', '.EXR, .exr')

                     Supported element types:
                       unsigned 32 bit, floating point 32 bit

       vista     a 2d vector field io plugin for vista

                     ('Recognized file extensions: ', '.V, .VF, .v, .vf')

                     Supported element types:
                       floating point 32 bit

EXAMPLE

       Deform  image  input.png  by  using  the transformation given in transform.v and store the
       result in deformed.png using linear interpolation

       mia-2ddeform -i input.png -t transform.v -o deformed.png -p bspline:d=1

AUTHOR(s)

       Gert Wollny

COPYRIGHT

       This software is Copyright (c) 1999‐2015 Leipzig, Germany and  Madrid,  Spain.   It  comes
       with   ABSOLUTELY   NO  WARRANTY  and  you  may redistribute it under the terms of the GNU
       GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the
       option '--copyright'.