Provided by: emboss_6.6.0+dfsg-6build1_amd64 bug


       pepnet - Draw a helical net for a protein sequence


       pepnet -sequence sequence -amphipathic toggle -squares string -diamonds string
              -octags string -graph graph

       pepnet -help


       pepnet is a command line program from EMBOSS (“the European Molecular Biology Open
       Software Suite”). It is part of the "Display,Protein:2D Structure" command group(s).


   Input section
       -sequence sequence

   Output section
       -amphipathic toggle
           If this is true then the residues ACFGILMVWY are marked as squares and all other
           residues are unmarked. This overrides any other markup that you may have specified
           using the qualifiers '-squares', '-diamonds' and '-octags'.

       -squares string
           By default the aliphatic residues ILVM are marked with squares. Default value: ILVM

       -diamonds string
           By default the residues DENQST are marked with diamonds. Default value: DENQST

       -octags string
           By default the positively charged residues HKR are marked with octagons. Default
           value: HKR

       -graph graph


       Bugs can be reported to the Debian Bug Tracking system (, or
       directly to the EMBOSS developers


       pepnet is fully documented via the tfm(1) system.


       Debian Med Packaging Team <>
           Wrote the script used to autogenerate this manual page.


       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package.
       It can be redistributed under the same terms as EMBOSS itself.