Provided by: gasic_0.0.r19-3_amd64
quality_check - perform a sanity check on the mapping results (SAM file)
quality_check [Options] SAMFILE
Perform a sanity check on the mapping results (SAM file). This tool analyzes the output of the read mapper and provides useful information to the user to decide whether the set of reference sequences and the mapper settings are feasible for the given dataset.
SAMFILE Name of the SAM file to analyze -h, --help show this help message and exit -o OUT, --outpath=OUT Path to the directory for the analysis output. [default: ./]