Provided by: gff2aplot_2.0-9_amd64
sim2gff - Converts SIM file into GFF formatted records
sim2gff [-frxyHh] sim_file > gff_file
This manual page documents briefly the sim2gff command. sim2gff is a program written in Perl that converts SIM file into GFF formatted records (for use with gff2aplot and gff2javaplot).
-h, --help Show summary of options. -f Output is written to a file named <sim_file>.gff. -r Interchange the order of sequences (Seq1 on y-axis, Seq2 on x-axis). -x <name> Specify the species name for species1 (default: "Seq1"). -y <name> Specify the species name for species2 (default: "Seq2"). -H Use the fasta file headers for species labels.
The following perl-like exit status are returned: 0 Error 1 Successful completion
ali2gff(1), blat2gff(1), gff2aplot(1), parseblast(1).
sim2gff was written by Thomas Wiehe <firstname.lastname@example.org>. This manual page was written by Nelson A. de Oliveira <email@example.com>, for the Debian project (but may be used by others). Mon, 21 Mar 2005 21:44:15 -0300 SIM2GFF(1)