Provided by: meryl_0~20150903+r2013-3_amd64
simple - the obvious array-based kmer counter
simple [-f|-r|-C] [-c compression] [-m mersize] -i input -o output
simple is a very simple mer counter. It allocates a gigantic 32-bit array, populates the array with mers, sorts, and writes the output. It will allocate 4 bytes per kmer. k=16 will require 16 GB to run.
-i input -o output -m mersize the mer size. Default is 22 -f forward kmer (this is the default) -r reverse kmer -C canonical kmer (lexicographically smaller of the forward and reverse kmer at each location) -c # mer compression