Provided by: libbio-perl-run-perl_1.7.1-3_all bug


       Bio::DB::SoapEUtilities::FetchAdaptor - Conversion of Entrez SOAP messages to BioPerl


        $fac = Bio::DB::SoapEUtilities->new();
        $soap_result = $fac->efetch( -db => 'protein', -id => 2597988 );
        $adp = Bio::DB::SoapEUtilities::FetchAdaptor(
                -result => $soap_result,
                -type => 'seq'
        while ( $gb_seq = $adp->next_obj ) {
           # do stuff


       "FetchAdaptor" is the base class of a system, modeled after Bio::SeqIO, to parse SOAP
       responses from the NCBI Entrez "efetch" utility into germane BioPerl objects.

       The user will rarely need to instantiate a "FetchAdaptor" with
       Bio::DB::SoapEUtilities::Result object as in the "SYNOPSIS". It usually suffices to use
       the "-auto_adapt" parameter in the factory "run()" method:

        my $fac = Bio::DB::SoapEUtilities->new();
        my $taxio = $fac->efetch(-db => 'taxonomy', -id => 1394)->run(-auto_adapt=>1);
        my $sp = $taxio->next_species; # Bio::Species objects
        my $seqio = $fac->efetch(-db => 'protein', -id => 730439)->run(-auto_adapt=>1);
        my $seq = $seqio->next_seq; # Bio::Seq::RichSeq objects


       Bio::DB::SoapEUtilities, "FetchAdaptor" subclasses


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AUTHOR - Mark A. Jensen

       Email maj -at- fortinbras -dot- us


       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

        Title   : new
        Usage   : my $obj = new Bio::DB::SoapEUtilities::FetchAdaptor();
        Function: Builds a new Bio::DB::SoapEUtilities::FetchAdaptor object
        Returns : an instance of Bio::DB::SoapEUtilities::FetchAdaptor
        Args    : named arguments
                  -som => $soap_som_object (soap message)
                  -type => $type ( optional, forces loading of $type adaptor )

        Title   : _initialize
        Usage   :
        Returns :
        Args    :

        Title   : _load_adaptor
        Usage   :
        Function: loads a FetchAdaptor subclass
        Returns :
        Args    : adaptor type (subclass name)

        Title   : obj_class
        Usage   : $adaptor->obj_class
        Function: Returns the fully qualified BioPerl classname
                  of the objects returned by next_obj()
        Returns : scalar string (class name)
        Args    : none

        Title   : next_obj
        Usage   : $obj = $adaptor->next_obj
        Function: Returns the next parsed BioPerl object from the
        Returns : object of class obj_class()
        Args    : none

        Title   : rewind
        Usage   :
        Function: Rewind the adaptor's iterator
        Returns :
        Args    : none

        Title   : result
        Usage   :
        Function: contains the SoapEUtilities::Result object
        Returns : Bio::DB::SoapEUtilities::Result object
        Args    : none

        Title   : type
        Usage   :
        Function: contains the fetch type of this adaptor
        Returns :
        Args    :