Provided by: libbio-perl-perl_1.7.2-2_all
Bio::Search::BlastStatistics - An object for Blast statistics
# this is a wrapper to hold the statistics from a Blast report my $bs = $result->get_statistics(); # you can get a statistic generically, like this: my $kappa = $bs->get_statistic("kappa"); # or specifically, like this: my $kappa2 = $bs->get_kappa();
This is a basic container to hold the statistics returned from a Blast.
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AUTHOR - Chad Matsalla
Email bioinformatics1 at dieselwurks dot com
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ get_statistic Title : get_statistic Usage : $statistic_object->get_statistic($statistic_name); Function: Get the value of a statistic named $statistic_name Returns : A scalar that should be a string Args : A scalar that should be a string set_statistic Title : set_statistic Usage : $statistic_object->set_statistic($statistic_name => $statistic_value); Function: Set the value of a statistic named $statistic_name to $statistic_value Returns : Void Args : A hash containing name=>value pairs