Provided by: libbio-perl-perl_1.7.2-2_all
Bio::Search::Result::WABAResult - Result object for WABA alignment output
# use this object exactly as you would a GenericResult # the only extra method is query_database which is the # name of the file where the query sequence came from
This object is for WABA result output, there is little difference between this object and a GenericResult save the addition of one method query_database. Expect many of the fields for GenericResult to be empty however as WABA was not intended to provide a lot of extra information other than the alignment.
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AUTHOR - Jason Stajich
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new Title : new Usage : my $obj = Bio::Search::Result::WABAResult->new(); Function: Builds a new Bio::Search::Result::WABAResult object Returns : Bio::Search::Result::WABAResult Args : -query_database => "name of the database where the query came from" query_database Title : query_database Usage : $obj->query_database($newval) Function: Data field for the database filename where the query sequence came from Returns : value of query_database Args : newvalue (optional) All other methods are inherited from Bio::Search::Result::GenericResult See the Bio::Search::Result::GenericResult for complete documentation of the rest of the methods that are available for this module.