Provided by: libbio-perl-perl_1.7.2-2_all bug


       Bio::SeqIO::bsml_sax - BSML sequence input/output stream using SAX


        It is probably best not to use this object directly, but rather go
        through the SeqIO handler system. To read a BSML file:

           $stream = Bio::SeqIO->new( -file => $filename, -format => 'bsml');

           while ( my $bioSeqObj = $stream->next_seq() ) {
               # do something with $bioSeqObj

        To write a Seq object to the current file handle in BSML XML format:

           $stream->write_seq( -seq => $seqObj);

        If instead you would like a XML::DOM object containing the BSML, use:

           my $newXmlObject = $stream->to_bsml( -seq => $seqObj);


        In addition to parts of the Bio:: hierarchy, this module uses:



        This object can transform Bio::Seq objects to and from BSML (XML)


   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to one of the Bioperl mailing lists.  Your
       participation is much appreciated.
                  - General discussion  - About the mailing lists

       Please direct usage questions or support issues to the mailing list:

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
        Report bugs to the Bioperl bug tracking system to help us keep track
        the bugs and their resolution. Bug reports can be submitted via the

AUTHOR - Jason Stajich

       Email jason-at-bioperl-dot-org


        Title   : next_seq
        Usage   : my $bioSeqObj = $stream->next_seq
        Function: Retrieves the next sequence from a SeqIO::bsml stream.
        Returns : A reference to a Bio::Seq::RichSeq object
        Args    :