Provided by: libbio-perl-run-perl_1.7.1-3_all bug


       Bio::Tools::Run::AnalysisFactory::soap - A SOAP-based access to the list of analysis tools


       Do not use this object directly, it is recommended to access it and use it through the
       Bio::Tools::Run::AnalysisFactory module:

         use Bio::Tools::Run::AnalysisFactory;
         my $list = Bio::Tools::Run::AnalysisFactory->new(-access => 'soap')
         print join ("\n", @$list) . "\n";


       All public methods are documented in the interface module "Bio::Factory::AnalysisI".


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       Martin Senger (


       Copyright (c) 2003, Martin Senger and EMBL-EBI.  All Rights Reserved.

       This module is free software; you can redistribute it and/or modify it under the same
       terms as Perl itself.


       This software is provided "as is" without warranty of any kind.




       None known at the time of writing this.


       The main documentation details are in "Bio::Factory::AnalysisI".

        Usage   : my $factory = Bio::Tools::Run::AnalysisFactory->new(@args);
                  (_initialize is internally called from the 'new()' method)
        Returns : nothing interesting
        Args    : This module recognises and uses following arguments:
                  Additionally, the main module Bio::Tools::Run::AnalysisFactory
                  recognises also:

       It populates calling object with the given arguments, and then - for some attributes and
       only if they are not yet populated - it assigns some default values.

       This is an actual new() method (except for the real object creation and its blessing which
       is done in the parent class Bio::Root::Root in method _create_object).

       Note that this method is called always as an object method (never as a class method) - and
       that the object who calls this method may already be partly initiated (from
       Bio::Tools::Run::AnalysisFactory::new method); so if you need to do some tricks with the
       'class invocation' you need to change Bio::Tools::Run::AnalysisFactory new method, not
       this one.

           A URL (also called an endpoint) defining where is located a Web Service functioning
           for this object.

           Default is "" (a service running at European
           Bioinformatics Institute on top of most of the EMBOSS analyses, and on top of few

           For example, if you run your own Web Service using Java(TM) Apache Axis toolkit, the
           location might be something like "http://localhost:8080/axis/services".

           In addition to the location parameter, you may need to specify also a location/URL of
           an HTTP proxy server (if your site requires one). The expected format is
           "http://server:port".  There is no default value.

           Defines your own SOAP::Lite object. Useful if you need finer-grained access to many
           features and attributes of the wonderful Paul Kulchenko's module.

   VERSION and Revision
        Usage   : print $Bio::Tools::Run::AnalysisFactory::soap::VERSION;
                  print $Bio::Tools::Run::AnalysisFactory::soap::Revision;