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NAME

       muse_exp_align  -  Create  a  coordinate offset table to be used to align exposures during
       exposure combination.

SYNOPSIS

       esorex muse_exp_align [OPTIONS] FILE.sof

DESCRIPTION

       Compute the coordinate offset for  each  input  field-of-view  image  with  respect  to  a
       reference.  The created list of coordinate offsets can then be used in muse_exp_combine as
       the field coordinate offsets to properly align the exposures during their combination.

OPTIONS

       --rsearch <str>
              Search radius (in arcsec) for each  iteration  of  the  offset  computation.  (str;
              default:   ´30.,4.,2.,0.8´).   The   full  name  of  this  option  for  the  EsoRex
              configuration file is muse.muse_exp_align.rsearch [default = 30.,4.,2.,0.8].

       --nbins <int>
              Number of bins to use for 2D  histogram  on  the  first  iteration  of  the  offset
              computation.  (int;  default:  60).  The  full  name  of this option for the EsoRex
              configuration file is muse.muse_exp_align.nbins [default = 60].

       --weight <bool>
              Use weighting. (bool; default: True). The full name of this option for  the  EsoRex
              configuration file is muse.muse_exp_align.weight [default = True].

       --fwhm <float>
              FWHM  in  pixels of the convolution filter. (float; default: 5.0). The full name of
              this option for the EsoRex configuration file is muse.muse_exp_align.fwhm  [default
              = 5.0].

       --threshold <float>
              Initial  intensity  threshold for detecting point sources in sigma above background
              RMS. (float;  default:  15.0).  The  full  name  of  this  option  for  the  EsoRex
              configuration file is muse.muse_exp_align.threshold [default = 15.0].

       --step <float>
              Increment/decrement  of  the  threshold  value  in  subsequent iterations.  (float;
              default: 0.5). The full name of this option for the EsoRex  configuration  file  is
              muse.muse_exp_align.step [default = 0.5].

       --iterations <int>
              Maximum  number  of  iterations used for detecting sources. (int; default: 100000).
              The  full  name  of  this   option   for   the   EsoRex   configuration   file   is
              muse.muse_exp_align.iterations [default = 100000].

       --srcmin <int>
              Minimum  number of sources which must be found. (int; default: 5). The full name of
              this  option  for  the  EsoRex  configuration  file  is  muse.muse_exp_align.srcmin
              [default = 5].

       --srcmax <int>
              Maximum  number of sources which may be found. (int; default: 80). The full name of
              this  option  for  the  EsoRex  configuration  file  is  muse.muse_exp_align.srcmax
              [default = 80].

       --roundmin <float>
              Lower limit of the allowed point-source roundness. (float; default: -1.0). The full
              name    of    this    option    for    the    EsoRex    configuration    file    is
              muse.muse_exp_align.roundmin [default = -1.0].

       --roundmax <float>
              Upper  limit of the allowed point-source roundness. (float; default: 1.0). The full
              name    of    this    option    for    the    EsoRex    configuration    file    is
              muse.muse_exp_align.roundmax [default = 1.0].

       --sharpmin <float>
              Lower  limit of the allowed point-source sharpness. (float; default: 0.2). The full
              name    of    this    option    for    the    EsoRex    configuration    file    is
              muse.muse_exp_align.sharpmin [default = 0.2].

       --sharpmax <float>
              Upper  limit of the allowed point-source sharpness. (float; default: 1.0). The full
              name    of    this    option    for    the    EsoRex    configuration    file    is
              muse.muse_exp_align.sharpmax [default = 1.0].

       Note  that  it  is possible to create a configuration file containing these options, along
       with suitable default values. Please refer to the details provided by the 'esorex  --help'
       command.

SEE ALSO

       The  full  documentation  for  the muse pipeline can be downloaded as a PDF file using the
       following URL:

              ftp://ftp.eso.org/pub/dfs/pipelines/muse/muse-pipeline-cookbook-2.2.0.pdf

       An  overview  over  the  existing  ESO  pipelines  can  be   found   on   the   web   page
       http://www.eso.org/sci/software/pipelines/.

       Basic documentation about the EsoRex program can be found at the esorex (1) man page.

       It  is  possible  to  call  the  pipelines  from python using the python-cpl package.  See
       http://packages.python.org/python-cpl/index.html for further information.

       The other recipes of the muse pipeline are muse_ampl(7), muse_astrometry(7), muse_bias(7),
       muse_create_sky(7),  muse_dark(7),  muse_exp_combine(7),  muse_flat(7),  muse_geometry(7),
       muse_lingain(7),   muse_lsf(7),   muse_qi_mask(7),   muse_scibasic(7),    muse_scipost(7),
       muse_scipost_apply_astrometry(7),                          muse_scipost_calibrate_flux(7),
       muse_scipost_combine_pixtables(7),                            muse_scipost_correct_dar(7),
       muse_scipost_correct_rv(7),    muse_scipost_make_cube(7),    muse_scipost_subtract_sky(7),
       muse_scipost_subtract_sky_simple(7), muse_standard(7), muse_twilight(7), muse_wavecal(7)

VERSION

       muse_exp_align 2.2.0

AUTHOR

       Ralf Palsa <usd-help@eso.org>

BUG REPORTS

       Please report any problems to usd-help@eso.org. Alternatively, you may send  a  report  to
       the ESO User Support Department <usd-help@eso.org>.

LICENSE

       This  file  is  part  of  the  MUSE  Instrument Pipeline Copyright (C) 2005, 2017 European
       Southern Observatory

       This program is free software; you can redistribute it and/or modify it under the terms of
       the  GNU  General  Public  License  as  published  by the Free Software Foundation; either
       version 2 of the License, or (at your option) any later version.

       This program is distributed in the hope that it will be useful, but WITHOUT ANY  WARRANTY;
       without  even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
       See the GNU General Public License for more details.

       You should have received a copy of the GNU General Public License along with this program;
       if  not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston,
       MA  02111-1307  USA