Provided by: bali-phy_3.3+dfsg-1_amd64
alignment-chop-internal – Remove ancestral sequences from an alignment.
alignment-chop-internal [OPTIONS] < alignments-file
Remove ancestral sequences from an alignment.
-h, –help produce help message –align arg file with sequences and initial alignment –alphabet arg set to `Codons' to prefer codon alphabets –tree arg file with tree that specifies leaves to keep -N arg, –nleaves arg number of sequences to keep
BAli-Phy online help: <http://www.bali-phy.org/docs.php>. Please send bug reports to <email@example.com>.
Benjamin Redelings. Feb 2018 alignment-chop-internal(1)