Provided by: bali-phy_3.3+dfsg-1_amd64
alignments-diff – Align two alignments for comparison.
alignments-diff alignment-file1 alignment-file2 [OPTIONS]
Align two alignments for comparison.
-h, –help produce help message
–alphabet arg set to `Codons' to prefer codon alphabets
–merge Stack the two alignments into one alignment with duplicate names –dual Write out the two aligned alignments separately –fill arg (=gap) blank columns filled with: gap or unknown -d arg, –differences-file arg Filename to store differences in AU format
BAli-Phy online help: <http://www.bali-phy.org/docs.php>. Please send bug reports to <firstname.lastname@example.org>.
Benjamin Redelings. Feb 2018 alignments-diff(1)