Provided by: augustus_3.3.1+dfsg-1_amd64 bug

NAME

       compileSpliceCands - Find introns parsing a set of exon candidates in GFF format

SYNOPSIS

       compileSpliceCands -f <splice candidates filename> -g <genome filename>

OPTIONS

   Parameters:
       -f <filename>
           potential splice sites in gff format

       -g <filename>
           genome file in fasta format

       -c <integer>
           defines the number of potential splice site every potential splice site itself is
           compared with

       -t <float>
           has to be between 0 and 1 and  defines how much the average coverage may differ

       -m <integer>
           defines how many bases around the splice site should be checked

       -d
           enables debugging output

       -i <integer>
           maximum length an Intron can be, default 500000 (human genome)

AUTHORS

       AUGUSTUS was written by M. Stanke, O. Keller, S. K├Ânig, L. Gerischer and L. Romoth.

ADDITIONAL DOCUMENTATION

       An exhaustive documentation can be found in the file /usr/share/augustus/README.TXT.

                                                                            COMPILESPLICECANDS(1)