Provided by: bitseq_0.7.5+dfsg-3ubuntu1_amd64 bug

NAME - generate read counts for each input file

SYNOPSIS [options] [<inputFile.thetaMeans>]+


              This  program  reads  supplied  .thetaMeans files and using either information from
              .prob files or Nmap option generates read counts for each input file provided.


       -h, --help
              show this help message and exit

       -o OUT, --outFile=OUT
              Output file

       -v, --verbose
              Verbose output

       -p PROBDIR, --probDir=PROBDIR
              Directory with .prob files. The program will look in here for files with same  name
              except  fot extension .prob in order to find out total-aligned-read counts for each

       -n NMAP, --Nmap=NMAP
              Comma separated list of total aligned-read-counts for each experiment.