Provided by: aegean_0.15.2+dfsg-2_amd64 bug


       parseval - comparative analysis of two alternative sources of annotation


       parseval [options] reference.gff3 prediction.gff3


       Basic options:

              Print debugging messages

              Print help message and exit

       -l|--delta: INT
              Extend gene loci by this many nucleotides; default is 0

              Print verbose warning messages

              Print version number and exit

              Output options:

       -a|--datashare: STRING
              Location  from which to copy shared data for HTML output (if `make install' has not
              yet been run)

       -f|--outformat: STRING
              Indicate  desired  output  format;  possible  options:  'csv',  'text',  or  'html'
              (default='text');  in  'text'  or  'csv' mode, will create a single file; in 'html'
              mode, will create a directory

              Do no print GFF3 output corresponding to each comparison

       -o|--outfile: FILENAME
              File/directory to which output will be written; default is the terminal (STDOUT)

              In HTML output mode, skip generation of PNG graphics for each gene locus

              Only print summary statistics, do not print individual comparisons

              Force overwrite of any existing output files

       -x|--refrlabel: STRING
              Optional label for reference annotations

       -y|--predlabel: STRING
              Optional label for prediction annotations

              Filtering options:

              Create a default configuration  file  for  filtering  reported  results  and  quit,
              performing no comparisons

       -r|--filterfile: STRING
              Use the indicated configuration file to filter reported results;

       -t|--maxtrans: INT
              Maximum transcripts allowed per locus; use 0 to disable limit; default is 32