Provided by: bio-tradis_1.3.3+dfsg-3_all
tradis_comparison - bio-tradis: compares two experimental conditions using the method of Dembek et al.
tradis_comparison [-h] [-f] [-t read cutoff] [-o outputfile.csv] [-p outputplot.pdf] --controls controls.txt --conditions conditions.txt
Compares two experimental conditions using the method of Dembek et al. mBio 2015. Read counts per gene are compared using edgeR. This analysis requires experimental replicates.
Required Arguments: --controls control libraries, generally growth in a permissive condition --conditions libraries exposed to the experimental condition being compared Optional Arguments: -o output filename -p output filename for diagnostic plots -f enable filtering on minimum read counts -t if --filter is enabled, sets minimum read count necessary in one condition for a gene to be included in the comparison.
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.