Provided by: bali-phy_3.3+dfsg-1_amd64
tree-mean-lengths – Compute the mean lengths for branches in the given topology.
tree-mean-lengths tree-file < in-file
Compute the mean lengths for branches in the given topology.
-h, –help produce help message –tree arg tree to re-root -s arg (=0), –skip arg (=0) number of tree samples to skip -u arg, –until arg Read until this number of trees. –prune arg Comma-separated taxa to remove –simple Ignore all branches not in the query tree -x arg (=1), –subsample arg (=1) factor by which to sub-sample –var report standard deviation of branch lengths instead of mean –no-node-lengths ignore branches not in the specified topology –safe Don't die if no trees match the topology –show-node-lengths Output special format -v, –verbose Output more log messages on stderr.
BAli-Phy online help: <http://www.bali-phy.org/docs.php>. Please send bug reports to <firstname.lastname@example.org>.
Benjamin Redelings. Feb 2018 tree-mean-lengths(1)