Provided by: python-treetime_0.2.4-1_all
ancestral_reconstruction - Reconstructs ancestral sequences and maps mutations to the tree
ancestral_reconstruction [-h] --aln ALN --tree TREE [--prot] [--marginal] [--infer_gtr] [--keep_overhangs]
Reconstructs ancestral sequences and maps mutations to the tree. The output consists of a file ending with _ancestral.fasta with ancestral sequences and a tree ending with _mutation.nexus with mutations added as comments like _A45G_... The inferred GTR model is written to stdout
-h, --help show this help message and exit --aln ALN fasta file with input sequences --tree TREE newick file with tree --prot protein alignment --marginal marginal instead of joint ML reconstruction --infer_gtr infer substitution model --keep_overhangs do not fill terminal gaps
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.