Provided by: cluster3_1.57-1_amd64

**NAME**

cluster3 — Eisen-clustering of microarray data

**SYNOPSIS**

cluster3[-ffilename][-l0|1][-ujobname][-g[0..9]][-e[0..9]][-m[msca]][-knumber][-s0|1][-xnumber][-ynumber]

**OPTIONS**

-h--helpShow summary of options.-ffilenamefile loding-ujobnameAllows you to specify a different name for the output files (default is derived from the input file name)-l0|1Specifies whether to log-transform the data (default is 0, no log-transform)-knumberSpecifies whether to run k-means clustering instead of hierarchical clustering, and the number of clusters k to use (default: 0)-xnumberSpecifies the horizontal dimension of the SOM grid (default: 2)-ynumberSpecifies the vertical dimension of the SOM grid (default: 1)-s0|1Specifies whether to calculate an SOM instead of hierarchical clustering (default: 0)-v--versionShow version of program. -g [0..9] Specifies the distance measure for gene clustering 0: No gene clustering 1: Uncentered correlation 2: Pearson correlation 3: Uncentered correlation, absolute value 4: Pearson correlation, absolute value 5: Spearman's rank correlation 6: Kendall's tau 7: Euclidean distance 8: Harmonically summed Euclidean distance 9: City-block distance (default: 1) -e [0..9] Specifies the distance measure for microarray clustering 0: No clustering 1: Uncentered correlation 2: Pearson correlation 3: Uncentered correlation, absolute value 4: Pearson correlation, absolute value 5: Spearman's rank correlation 6: Kendall's tau 7: Euclidean distance 8: Harmonically summed Euclidean distance 9: City-block distance (default: 0) -m [msca] Specifies which hierarchical clustering method to use m: Pairwise complete- linkage s: Pairwise single-linkage c: Pairwise centroid-linkage a: Pairwise average- linkage (default: m)

**SEE** **ALSO**

mapletree (1), smile (1).

**AUTHOR**

This manual page was written by Steffen Moeller moeller@pzr.uni-rostock.de for theDebiansystem (but may be used by others). Permission is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by the Free Software Foundation. On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL. CLUSTER3(1)