Provided by: wigeon_20101212+dfsg1-2_all bug

NAME

       cm_to_wigeon - helper for wigeon (Pintail 16S DNA anomaly detection)

DESCRIPTION

       Unfortunately  this tools that comes in connection with wigeon(1) is not documented but it
       regards the options below.  If you know better about its purpose please  drop  us  a  note
       using reportbug on your Debian system.

OPTIONS

   Required:
       --query_NAST
              multi-fasta file containing query sequences in alignment format

       --db_NAST
              db in NAST format

       --db_FASTA
              db in fasta format (megablast formatted)

   Common options
       -n     number of top matching database sequences to compare to (default 15)

       -R     min divergence ratio default: 1.007

       -P     min percent identity among matching sequences (default 90)

   Parameters to tune ChimeraMaligner:
       Scoring parameters:

       -M     match score   (default: +5)

       -N     mismatch penalty  (default: -4)

       -Q     min query coverage by matching database sequence (default: 70)

       -T     maximum traverses of the multiple alignment  (default: 1)

   Flags:
       --printAlignments
              (default off)

       -v     verbose

       --exec_dir
              cd here before running

SEE ALSO

       http://microbiomeutil.sourceforge.net/

AUTHOR

       This  manual  page  was written by Andreas Tille <tille@debian.org> but can be freely used
       for any other distribution.