Provided by: tophat_2.1.1+dfsg1-2_amd64 bug

NAME

       contig_to_chr_coords - tophat component taking NCBI seq_contig file and maps contig coords

DESCRIPTION

       contig_to_chr_coords:  Takes  the  NCBI  seq_contig  file  and maps contig coords to whole
       chromosome coords in a GTF, GFF, or BED file

              contig_to_chr_coords.py                <format_flag>                <seq_contig.md>
              <junctions.bed|transcripts.gff|transcripts.gtf>

              for help use --help