Provided by: chado-utils_1.31-5_all bug

NAME - a tool for creating a gff3 file given a list of dbxrefs and
       fasta files.


        % --fasta_dir <directory> --tmp_dir <directory> \


         --fasta_dir          Directory containing fasta files (required)
         --tmp_dir            Temporary directory (default: /tmp)
         --type               SO term to use for created features (default: region)
         --source             Column 2 of the GFF file (default: .)


       This tool takes a list of tab separated db identifiers and accessions on the command line
       (like would produce) along with a directory containing
       fasta files and creates a GFF file.  The script tries several options for identifying the
       accession in the fasta description line.  These are the types of things it currently

           to get TC130707

           to get CG180994.1

           to get 2_11498.

           to get 123456 (ie, the entire line, which is the last resort).

       If you have a description line that is different from this and would like help modifying
       this script to work with your data, please email the schema mailing list:  If you modify the script yourself to work with your
       data, please also mail the schema mailing list to report your changes so they can be


       Scott Cain <>.

       Copyright (c) 2007,2008

       This library is free software; you can redistribute it and/or modify it under the same
       terms as Perl itself.