Provided by: genometools_1.5.10+ds-3_amd64 bug


       gt-matchtool - Parse match formats and/or invoke matching tools.


       gt matchtool [option ...]


       -type [...]
           choose match file format: OPENMATCH: open match format, e.g. vmatch BLASTOUT : tabular
           BLAST output (-m 8) BLASTALLP: invoke BLASTALL with blastp BLASTALLN: invoke BLASTALL
           with blastn BLASTP : invoke blastp BLASTN : invoke blastn LAST : invoke LAST SW : use
           Smith-Waterman (default: OPENMATCH)

       -matchfile [filename]
           set input file name (default: undefined)

       -db [filename]
           set database file name (default: undefined)

       -swminlen [value]
           set minimum required alignment length (for Smith-Waterman alignment) (default: 10)

       -swmaxedist [value]
           set maximum allowed edit distance (for Smith-Waterman alignment) (default: 0)

       -query [filename]
           set query file name (default: undefined)

           display help and exit

           display version information and exit


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