Provided by: hisat2_2.1.0-2_amd64 bug


       hisat2-inspect-l - HISAT2 index inspector, large index binary


       hisat2-inspect [options]* <ht2_base>


       HISAT2       version       2.1.0       by       Daehwan      Kim      (,

              ht2 filename minus trailing .1.ht2l/.2.ht2l

              By default, prints FASTA records of the indexed nucleotide  sequences  to  standard
              out.   With  -n,  just  prints  names.  With -s, just prints a summary of the index
              parameters and sequences.  With -e, preserves colors if applicable.


       -a/--across <int>
              Number of characters across in FASTA output (default: 60)

              Print summary incl. ref names, lengths, index properties

              Print reference sequence names only

       --snp  Print SNPs

       --ss   Print splice sites

              Print splice sites including those not in the global index

       --exon Print exons

              Reconstruct reference from .ht2l (slow, preserves colors)

              Verbose output (for debugging)

              print detailed description of tool and its options

       --help print this usage message

       64-bit  Built  on  Debian  24  September  2018  Compiler:  gcc   version   8.2.0   (Ubuntu
       8.2.0-9ubuntu1)   Options:   -O3     -funroll-loops  -g3  -Wdate-time  -D_FORTIFY_SOURCE=2
       -DPOPCNT_CAPABILITY Sizeof {int, long, long long, void*, size_t, off_t}: {4, 8, 8,  8,  8,