Provided by: murasaki-common_1.68.6-8_all
maf2anchors -- Converts maf files into Murasaki anchor sets
--prefix=<S> use <S> as a prefix for output file names (otherwise uses <file.maf>) --rifts=<I> allow up to <I> rifts. --fakeseqs generate fake sequence length files and sequence stubs based on sequence length data in MAF file --trust trust the comment annotation added by TBA on the second line of the file (if present) that it lists tree used in the alignment and all of the sequences involved. Defaults to on. use --notrust to distrust TBA tags (technically this data isn't part of the file format specification and is just crammed into comments that TBA produces, but might not be present or accurate on all MAF files, thus we give you the option to distrust it). --sort Sort the sequences found by --trust (so as to match the output that would have happened with --notrust).