Provided by: seer_1.1.4-2build1_amd64
mash2matrix - create all pairwise distances between samples
mash2matrix <matrix_in> > all_distances.csv
Uses mash (http://mash.readthedocs.io/) to create all pairwise distances between samples. NB: the input to mash should be the same order as the .pheno file generate <assemblies.fa> with: cut -f 1 metadata.pheno | tr ' ' ' ' Then run mash sketch -o reference <assemblies.fa> mash dist reference.msh reference.msh > mash_distances.txt mash2matrix mash_distances.txt > all_distances.csv
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.