Provided by: murasaki-common_1.68.6-8_all
mauveAlignment2anchors - converts a Mauve alignment into Murasaki anchor format based on gapped alignment data (each gap triggers a new anchor). Note this refers to the Mauve alignment format, not the LAGAN .alignment file that Mauve also outputs.
mauveAlignment2anchors <input> [output]
--autoout -- create output file name automatically (on by default) --noautoout -- disable the above "autoout" option