Provided by: mira-assembler_4.9.6-4_amd64
mira - The Genome and EST Sequence Assembly System
The mira genome and RNA assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments. The purpose of the mira executable is to assemble sequencing data.
mira [OPTION] manifest_file [manifest_file] ...
-c / --cwd=directory Change working directory -h / --help Print short help and exit -m / --mcheck Only check the manifest file, then exit. -M / --mdcheck Only check the manifest file and presence of data files, then exit. -r / --resume Resume an interrupted assembly -t / --thread Force number of threads (overrides equivalent -GE:not manifest entry). -v / --version Print version and exit
miraconvert(1), mirabait(1) A more extensive documentation is provided in the MIRA manual available online at http://mira-assembler.sourceforge.net/docs/DefinitiveGuideToMIRA.html On Debian, this can be installed with the mira-doc package and can then be found at /usr/share/doc/mira-assembler/DefinitiveGuideToMIRA.html. On other systems, you may want to check in /usr/local/share/mira/doc or run "locate DefinitiveGuideToMIRA" to find it locally. You can also subscribe one of the MIRA mailing lists at http://www.chevreux.org/mira_mailinglists.html After subscribing, mail general questions to the MIRA talk mailing list: firstname.lastname@example.org
To report bugs or ask for features, please use the ticketing system at: http://sourceforge.net/projects/mira-assembler/
The author of the mira code is Bastien Chevreux <email@example.com> This manual page was written by Andreas Tille <firstname.lastname@example.org> and Bastien Chevreux <email@example.com> but can be freely used for any other distribution.