Provided by: obitools_1.2.12+dfsg-2_amd64
obipr2 - description of obipr2 obipr2: converts and optionally download the PR2 database into an ecoPCR database. The formated database include the taxonomy as defined by the PR2 authors. WARNING: Take care that the numeric taxids associated to the sequences are specific to this PR2 database and not compatible with the NCBI taxids. The taxids present in a version of the PR2 database are are just valid for this version of the database and not compatible with the taxids used in another version downloaded at an other time. Example: > obipr2 This command downloads and formats the latest version of the PR2 database from the official `PR2 web site<http://ssu-rrna.org/pr2/>`_ .
OBIPR2 SPECIFIC OPTIONS
--local=<DIRNAME> Specify you have already downloaded a copy of the PR2 database located at the following URL http://126.96.36.199/pr2/download/entire_database Example: > obipr2 --local=PR2Dir This format PR2 database pre-downloaded in the PR2Dir directory.
-h, --help Shows this help message and exits. --DEBUG Sets logging in debug mode.
The OBITools Development Team - LECA
2019 - 2015, OBITool Development Team 1.02 12 Jan 28, 2019 OBIPR2(1)