Provided by: subread_1.6.3+dfsg-1_amd64
propmapped - calculate the proportion of mapped reads/fragments
prommapped [options] -i <file> Required arguments: -i <string> An input file containing read mapping results. Both SAM or BAM formats are supported. Optional arguments: -o <string> Name of output file including mapping statistics. -f If specified, fragments (read pairs) will be counted instead of individual reads. This option is only applicable for paired-end reads. -p If specified, only properly paired reads will be counted. This option is only applicable for paired-end reads. propMapped v1.6.3 Calculate the proportion of mapped reads/fragments.