Provided by: sga_0.10.15-4_amd64
sga-aligm - align reads to contigs
sga-align [options] <contigs file> <input files>
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
--name=STR Use STR as the basename for the output files. -t,--threads=N Use N threads when running bwa.
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.