Provided by: sga_0.10.15-4_amd64 bug


       sga-aligm - align reads to contigs


       sga-align [options] <contigs file> <input files>


       The  major  goal  of  SGA  is  to  be  very memory efficient, which is achieved by using a
       compressed representation of DNA sequence reads.

       SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph
       formulation  of  assembly  and  uses the FM-index/Burrows-Wheeler transform to efficiently
       find overlaps between sequence reads.


              Use STR as the basename for the output files.

              Use N threads when running bwa.


       This manpage was written by Andreas Tille for the Debian distribution and can be used  for
       any other usage of the program.