Provided by: python-treetime_0.2.4-1_all
temporal_signal - Calculates the root-to-tip regression and quantifies the 'clock-i-ness' of a tree
temporal_signal [-h] --tree TREE --dates DATES [--aln ALN] [--infer_gtr] [--reroot] [--plot] [--verbose VERBOSE]
Calculates the root-to-tip regression and quantifies the 'clock-i-ness' of the tree. It will optionally reroot the tree to maximize the clock-like signal and recalculate branch length.
-h, --help show this help message and exit --tree TREE newick file with tree --dates DATES csv with dates for nodes with 'node_name, date' where date is float (as in 2012.15) --aln ALN fasta file with input sequences --infer_gtr infer substitution model --reroot reroot the tree to maximize the correlation of root-totip distance with sampling time --plot --verbose VERBOSE verbosity of output 0-6
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.