Provided by: seqan-apps_2.4.0+dfsg-11ubuntu1_amd64
tree_recon - Tree reconstruction
tree_recon [OPTIONS] -m IN.DIST
Reconstruct phylogenetic tree from Phylip matrix IN.DIST.
-h, --help Display the help message. --version Display version information. Input / Output: -m, --matrix INPUT_FILE Name Phylip distance matrix file. Must contain at least three species. Valid filetype is: .dist. -o, --out-file OUTPUT_FILE Path to write output to. Valid filetypes are: .newick and .dot. Default: tree.dot. Algorithm Options: -b, --build STRING Tree building method. nj: neighbour-joining, min: UPGMA single linkage, max: UPGMA complete linkage, avg: UPGMA average linkage, wavg: UPGMA weighted average linkage. Neighbour-joining creates an unrooted tree. We root that tree at the least joined pair. One of nj, min, max, avg, and wavg. Default: nj.
CONTACT AND REFERENCES
For questions or comments, contact: Tobias Rausch <firstname.lastname@example.org> SeqAn Homepage: http://www.seqan.de