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NAME

       tree_recon - Tree reconstruction

SYNOPSIS

       tree_recon [OPTIONS] -m IN.DIST

DESCRIPTION

       Reconstruct phylogenetic tree from Phylip matrix IN.DIST.

OPTIONS

       -h, --help
              Display the help message.

       --version
              Display version information.

   Input / Output:
       -m, --matrix INPUT_FILE
              Name  Phylip  distance  matrix  file.   Must  contain at least three species. Valid
              filetype is: .dist.

       -o, --out-file OUTPUT_FILE
              Path to write output to. Valid filetypes are: .newick and .dot. Default: tree.dot.

   Algorithm Options:
       -b, --build STRING
              Tree building method. nj: neighbour-joining, min: UPGMA single linkage, max:  UPGMA
              complete linkage, avg: UPGMA average linkage, wavg: UPGMA weighted average linkage.
              Neighbour-joining creates an unrooted tree.  We root that tree at the least  joined
              pair. One of nj, min, max, avg, and wavg. Default: nj.

CONTACT AND REFERENCES

       For questions or comments, contact:
              Tobias Rausch <rausch@embl.de>

       SeqAn Homepage:
              http://www.seqan.de