Provided by: scoary_1.6.16-1_all
vcf2scoary - takes in vcf files and creates a presence/absence matrix of mutations in the Roary/Scoary format
vcf2scoary [-h] [--out OUT] [--types TYPES] [--version] [--force] <VCF_file>
positional arguments: <VCF_file> The VCF file to convert to Roary/Scoary format optional arguments: -h, --help show this help message and exit --out OUT The path to the output file --types TYPES The types of variants to include in the output. NOTE: This works if TYPE=XX can be found in the INFO column of the vcf file. The special keyword ALL includes all types. This is the default setting. Common types are snp, mnp, ins, del and complex. Give as comma-separated list. Example: --types snp,ins,del --version show program's version number and exit --force Force overwriting of output file. (If it already exists) by Ola Brynildsrud (firstname.lastname@example.org)
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.