Provided by: libbio-primerdesigner-perl_0.07-6_all
Bio::PrimerDesigner::Table -- Draw HTML tables for PCR primer display
Draws simple HTML tables to display Bio::PrimerDesigner PCR primer design and e-PCR results for web applications.
info_table Prints a two-column table for generic, key-value style annotations. Expects to be passed the name of the gene/feature/etc. and a hash of attributes. If there is an 'image' key, the value is assumed to be an image URL, which is printed in a double-wide cell at the bottom of the table. my $gene = 'Abc-1'; my %gene_info = ( Chromosome => I, Start => 100450, Stop => 102893, Strand => '+' ); my $page = Bio::PrimerDesigner::Tables->new; $page->info_table( $gene, %gene_info ); PCR_header Returns a generic header for the PCR primer table. Does not expect any argumments. PCR_set Returns the top row for the PCR primer table. Expects the primer set number as its only argument. PCR_row Returns table rows with PCR primer info. Should be called once for each primer pair. Expects to be passed a hash containing the Bio::PrimerDesigner::Result object and the primer set number and an (optional) label. my $pcr_row = PCR_row( primers => $result_obj, setnum => $set_number, label => $label ); ePCR_row Returns table rows summarizing e-PCR results. Expects to be passed an Bio::PrimerDesigner::Result e-PCR results object and an optional e-PCR label. render Renders the image URL. Expects to be passed a hash of the map start and stop, and other features to be mapped (i.e. gene,forward_primer,reverse_primer, label,start and stop of each feature, and gene strand). my $image = $page->render( start => $startleft, stop => $startright, feat => $features ); PCR_map Returns a 6 column wide table cell with the <IMG ...> info. Will display the image of mapped primers in the browser when passed the image URL.
Copyright (C) 2003-2009 Sheldon McKay <firstname.lastname@example.org>.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; version 3 or any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.